Cortexa research tool·genomics·dbfetch

Dbfetch Fetch Entry

Fetch a single database entry by ID from various databases (UniProt, PDB, etc.) in specified format. Supports FASTA, XML, JSON, and other formats.

Livelast probed 2026-04-30 23:07Z· 123msCortexa

Status

The most recent probe succeeded. Safe to call from the agent today.

Last probed: 1d ago
Last success: 1d ago
Last latency: 123ms

Schema

JSON Schema the agent (or your API call) must match.

{
  "properties": {
    "db": {
      "description": "Database name (e.g., 'uniprotkb', 'pdb', 'embl', 'ensembl')",
      "type": "string"
    },
    "format": {
      "default": "fasta",
      "description": "Output format (e.g., 'fasta', 'xml', 'json', 'txt'). Default: 'fasta'",
      "enum": [
        "fasta",
        "xml",
        "json",
        "txt",
        "gff",
        "embl",
        "genbank"
      ],
      "type": "string"
    },
    "id": {
      "description": "Entry ID (e.g., UniProt accession 'P05067', PDB ID '1A2B')",
      "type": "string"
    }
  },
  "required": [
    "db",
    "id"
  ],
  "type": "object"
}

Examples (1)

Default Dbfetch Fetch Entry call

public-safeinput

{
  "db": "",
  "id": ""
}

Expected response keys: success

Anonymous-safe example. Rate-limited; no sign-in required.

Identifiers

Catalog ID: tu_dbfetch_fetch_entry
Tool name: dbfetch_fetch_entry
Added: 2026-04-30 22:47Z
Tags: tooluniverse

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