Cortexa research tool·structure·visualization_molecule_2d

Visualize Molecule 2d

Visualize 2D molecular structures using RDKit. Supports SMILES, InChI, molecule names, and various output formats including PNG, SVG, and interactive HTML. Prerequisites: Requires 'rdkit' package (install: pip install Cortexa Tool Mesh[visualization]).

Livelast probed 2026-04-30 23:07Z· 131msCortexa

Status

The most recent probe succeeded. Safe to call from the agent today.

Last probed: 1d ago
Last success: 1d ago
Last latency: 131ms

Schema

JSON Schema the agent (or your API call) must match.

{
  "properties": {
    "height": {
      "default": 400,
      "description": "Height of the visualization in pixels",
      "type": "integer"
    },
    "inchi": {
      "description": "InChI string representation of the molecule",
      "type": "string"
    },
    "include_stereo": {
      "default": true,
      "description": "Whether to include stereochemistry information",
      "type": "boolean"
    },
    "molecule_name": {
      "description": "Common name of the molecule (will be resolved to SMILES via PubChem)",
      "type": "string"
    },
    "output_format": {
      "default": "png",
      "description": "Output format",
      "enum": [
        "png",
        "svg"
      ],
      "type": "string"
    },
    "show_atom_numbers": {
      "default": false,
      "description": "Whether to show atom numbers",
      "type": "boolean"
    },
    "show_bond_numbers": {
      "default": false,
      "description": "Whether to show bond numbers",
      "type": "boolean"
    },
    "smiles": {
      "description": "SMILES string representation of the molecule",
      "type": "string"
    },
    "width": {
      "default": 400,
      "description": "Width of the visualization in pixels",
      "type": "integer"
    }
  },
  "required": [
    "smiles",
    "inchi",
    "molecule_name"
  ],
  "type": "object"
}

Examples (1)

Default Visualize Molecule 2d call

public-safeinput

{
  "height": 1,
  "inchi": "",
  "include_stereo": false,
  "molecule_name": "",
  "show_atom_numbers": false,
  "show_bond_numbers": false,
  "smiles": "CC(=O)Oc1ccccc1C(=O)O",
  "width": 1
}

Expected response keys: success

Anonymous-safe example. Rate-limited; no sign-in required.

Identifiers

Catalog ID: tu_visualize_molecule_2d
Tool name: visualize_molecule_2d
Added: 2026-04-30 22:47Z
Tags: tooluniverse

Visualize Molecule 2d

Livelast probed 2026-04-30 23:07Z· 131msCortexa

Schema

JSON Schema the agent (or your API call) must match.

{ "properties": { "height": { "default": 400, "description": "Height of the visualization in pixels", "type": "integer" }, "inchi": { "description": "InChI string representation of the molecule", "type": "string" }, "include_stereo": { "default": true, "description": "Whether to include stereochemistry information", "type": "boolean" }, "molecule_name": { "description": "Common name of the molecule (will be resolved to SMILES via PubChem)", "type": "string" }, "output_format": { "default": "png", "description": "Output format", "enum": [ "png", "svg" ], "type": "string" }, "show_atom_numbers": { "default": false, "description": "Whether to show atom numbers", "type": "boolean" }, "show_bond_numbers": { "default": false, "description": "Whether to show bond numbers", "type": "boolean" }, "smiles": { "description": "SMILES string representation of the molecule", "type": "string" }, "width": { "default": 400, "description": "Width of the visualization in pixels", "type": "integer" } }, "required": [ "smiles", "inchi", "molecule_name" ], "type": "object" }

Examples (1)

Default Visualize Molecule 2d call

public-safeinput

{
  "height": 1,
  "inchi": "",
  "include_stereo": false,
  "molecule_name": "",
  "show_atom_numbers": false,
  "show_bond_numbers": false,
  "smiles": "CC(=O)Oc1ccccc1C(=O)O",
  "width": 1
}

Expected response keys: success

Anonymous-safe example. Rate-limited; no sign-in required.